"Does Collective Genetic Regulation exist?" J. M. Deutsch arXiv:2106.15732

"State-to-State Cosmology: a new view on the cosmological arrow of time and the past hypothesis" J. M. Deutsch, Anthony Aguirre arXiv:2106.15692

"A brief introduction to observational entropy" Dominik Šafránek, Anthony Aguirre, Joseph Schindler, J. M. Deutsch arXiv:2008.04409

"Typical and extreme entropies of long-lived isolated quantum systems" Dana Faiez, Dominik Šafránek, J. M. Deutsch, and Anthony Aguirre. Phys. Rev. A 101, 052101 (2020) (Copyright 2020 by the American Physical Society.) pdf

"Classical dynamical coarse-grained entropy and comparison with the quantum version" Dominik Šafránek, Anthony Aguirre, and J. M. Deutsch. Phys. Rev. E 102, 032106 (2020) (Copyright 2020 by the American Physical Society.) pdf

"Spontaneous Circulation of Active Microtubules Confined by Optical Traps" Stephen E Martin, Matthew E Brunner, and Joshua M Deutsch. open access.

"Probabilistic bound on extreme fluctuations in isolated quantum systems", Joshua M. Deutsch, Dominik Šafránek and Anthony Aguirre. Phys. Rev. E 101, 032112 (2020). (Copyright 2020 by the American Physical Society.) pdf

"Quantum coarse-grained entropy and thermalization in closed systems", Dominik Šafránek, Joshua M. Deutsch, and Anthony Aguirre. Phy. Rev A 99, 012103 (2019) (Copyright 2019 by the American Physical Society.) pdf

"Quantum coarse-grained entropy and thermodynamics." Dominik Šafránek, Joshua M. Deutsch, and Anthony Aguirre. Phys. Rev. A 99 010101 (2019). (Copyright 2019 by the American Physical Society.) pdf

"Eigenstate thermalization hypothesis", Joshua M. Deutsch, Rep. Prog. Phys. 81 082001 (2018). abstract and open access paper

"Computational mechanisms in genetic regulation by RNA". J.M. Deutsch, Journal of Theoretical Biology 458 156-168 (2018). (Copyright 2018 Elsevier B.V. or its licensors or contributors) pdf

"Emergence of metachronal waves in active microtubule arrays" Stephen E. Martin, Matthew E. Brunner, and Joshua M. Deutsch Phys. Rev. Fluids 4, 103101 (2019) (Copyright 2019 by the American Physical Society.) pdf

"A Mechanism for Cytoplasmic Streaming: Kinesin-Driven Alignment of Microtubules and Fast Fluid Flows", Corey E. Monteith, Matthew E. Brunner, Inna Djagaeva, Anthony M. Bielecki, Joshua M. Deutsch, William M. Saxton Biophysical Journal, 110 2053-2065 (2016). (Copyright 2016 Elsevier B.V. or its licensors or contributors) pdf

"Collective regulation by non-coding RNA" J. M. Deutsch arXiv:1409.1899

"Motor function in interpolar microtubules during metaphase" J. M. Deutsch, I. P. Lewis (Copyright 2015 Elsevier B.V. or its licensors or contributors) pdf

"Biophysics software for interdisciplinary education and research" (Copyright 2013 by the American Association of Physics Teachers.) J. M. Deutsch Am. J. Phys. 82, 442 (2014) pdf abstract

"Microscopic origin of thermodynamic entropy in isolated systems" (Copyright 2013 by the American Physical Society.) J. M. Deutsch, H. Li, and A. Sharma Phys. Rev. E 87, 042135 (2013) pdf abstract

"Polymer dynamics with inertia" J. M. Deutsch J. Poly Sci B: Polymer Physics 50, 379-386 (2012) full text

"Analysis of microtubule motion due to drag from kinesin walkers" J. M. Deutsch, M. E. Brunner, William M. Saxton arxiv

"The mechanics of a microscopic mixer: microtubules and cytoplasmic streaming in Drosophila oocytes" J. M. Deutsch, M. E. Brunner, William M. Saxton arxiv

"Density fluctuations of polymers in disordered media" (Copyright 2011 by the American Physical Society.) J. M. Deutsch and M. Olvera de la Cruz Phys. Rev. E 83, 031801 (2011) pdf abstract

"Ideal linear-chain polymers with fixed angular momentum" (Copyright 2011 by the American Physical Society.) M. Brunner and J.M. Deutsch Phys. Rev. E 84, 011804 (2011) pdf abstract

"Collision of Polymers in a Vacuum" J.M. Deutsch Phys. Rev. E 83, 051801 (2011) (Copyright 2011 by the American Physical Society.) pdf abstract

"Internal dissipation of a polymer" J.M. Deutsch Phys. Rev. E 81, 061804 (2010) pdf (Copyright 2010 by the American Physical Society.) abstract

"Thermodynamic entropy of a many-body energy eigenstate" J.M. Deutsch New J. Phys. 12 075021/(1--19) (2010). (Copyright 2010 by the Institute of Physics.) abstract and open access paper

"Induced orientational effects in relaxation of polymer melts" J.M. Deutsch and J.H. Pixley, Phys. Rev. E 80 011803 (2009) pdf (Copyright 2009 by the American Physical Society.) abstract

"Exact Solution to Ideal Chain with Fixed Angular Momentum", 2008 J.M. Deutsch, pdf (Copyright 2008 by the American Physical Society.) abstract

"Polymers in a Vacuum" J.M. Deutsch, Phys. Rev. Lett. 99 238301 (2007). pdf (Copyright 2007 by the American Physical Society.) abstract

"Spin Precession and Avalanches" J.M. Deutsch and A. Berger, Phys. Rev. Lett. 99, 027207 (2007). pdf (Copyright 2007 by the American Physical Society.) abstract

"Subharmonics and Aperiodicity in Hysteresis Loops", J. M. Deutsch and Onuttom Narayan, Phys. Rev. Lett. 91, 200601 (2003) pdf (Copyright 2007 by the American Physical Society.) abstract

"Scaling of Polymers in Aligned Rods" J. M. Deutsch, , and M. Warkentin, Phys. Rev. Lett. 95, 257802 (2005) pdf (Copyright 2005 by the American Physical Society.) abstract

"Hysteresis multicycles in nanomagnet arrays" J. M. Deutsch, T. Mai, and Onuttom Narayan, Phys. Rev. E 71, 026120 (2005) pdf (Copyright 2007 by the American Physical Society.) abstract

"Disorder-induced magnetic memory: Experiments and theories" M. S. Pierce et al pdf (Copyright 2007 by the American Physical Society.) abstract

"Disorder-Induced Microscopic Magnetic Memory" M. S. Pierce et al Phys. Rev. Lett. 94, 017202 (2005). pdf (Copyright 2005 by the American Physical Society.) abstract

"Mechanism for nonequilibrium symmetry breaking and pattern formation in magnetic films" J. M. Deutsch and T. Mai, Phys. Rev. E 72, 016115 (2005) pdf (Copyright 2005 by the American Physical Society.) abstract

"One dimensional heat conductivity exponent from random collision model", J. M. Deutsch and Onuttom Narayan, Phys.Rev. E 68, 010201(R) (2003) pdf (Copyright 2003 by the American Physical Society.) abstract

"Correlations and scaling in one-dimensional heat conduction", J. M. Deutsch and Onuttom Narayan, Phys.Rev. E 68, 041203 (2003) pdf (Copyright 2003 by the American Physical Society.) abstract

"Evolutionary algorithms for finding optimal gene sets in microarray prediction" , J.M. Deutsch, Bioinformatics 19, 45 (2003). Supplemental information

"Design of force fields from data at finite temperature" J. M. Deutsch, Tanya Kurosky Phys. Rev. E 56, 4553 (1997) pdf (Copyright 1997 by the American Physical Society.) abstract

Design of Copolymeric Materials", T. Kurosky and J.M. Deutsch, J. Phys. A. 28, L387 (1995).

"Transforming Signs to Phase Distributions in Quantum Simulations" J.M. Deutsch Phys. Rev. E Rapid Communications 50, R2411 (1995). pdf (Copyright 1997 by the American Physical Society.) abstract

"Simulation of forces on entangled polymers due to slippage" J.M. Deutsch and H. Yoon, J. Chem. Phys. 102, 7251 (1995).

"Dynamics of a polymer in the presence of permeable membranes" H. Yoon and J.M. Deutsch, J. Chem. Phys. 102, 9090 (1995).

"Generic behavior in linear systems with multiplicative noise" J.M. Deutsch, Phys. Rev. E. Rapid Communications 48, 4179 (1994).

"Probability distribution for a multifractal field" J.M. Deutsch, and R.A. Zacher Phys. Rev. E. Rapid Communications 49, 8 (1994).

"Dynamics of a Grafted Chain into a Rubber Network: A Monte Carlo Study" J.M. Deutsch and H. Yoon Macromol. 27, 5720 (1994).

"The Dynamics of DNA Gel Electrophoresis" in "Pulsed-Field Electrophoresis, Methods in Molecular Biology series" Humana Press, Clifton, New Jersey (1991).

"Quantum statistical mechanics in a closed system" J.M. Deutsch, Phys. Rev. A 42 2046 (1991) pdf (Copyright 1991 by the American Physical Society.) abstract. Supplemental information.

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